Get intensity distributation plot for one specific feature.
intensity_plot(
object,
variable_id,
variable_index,
color_by,
order_by,
desc = FALSE,
interactive = TRUE
)
(required) A mass_dataset object.
Variable id.
Variable index. You need to provide this or variable_id.
which column (in variable_info) is used to color variables
which column (in variable_info) is used to order variables
Descend the order? TRUE or FALSE.
Interactive plot or not. TRUE or FALSE.
A ggplot2 class object.
data("expression_data")
data("sample_info")
data("sample_info_note")
data("variable_info")
data("variable_info_note")
object =
create_mass_dataset(
expression_data = expression_data,
sample_info = sample_info,
variable_info = variable_info,
sample_info_note = sample_info_note,
variable_info_note = variable_info_note
)
object
#> --------------------
#> massdataset version: 1.0.12
#> --------------------
#> 1.expression_data:[ 1000 x 8 data.frame]
#> 2.sample_info:[ 8 x 4 data.frame]
#> 3.variable_info:[ 1000 x 3 data.frame]
#> 4.sample_info_note:[ 4 x 2 data.frame]
#> 5.variable_info_note:[ 3 x 2 data.frame]
#> 6.ms2_data:[ 0 variables x 0 MS2 spectra]
#> --------------------
#> Processing information (extract_process_info())
#> 1 processings in total
#> create_mass_dataset ----------
#> Package Function.used Time
#> 1 massdataset create_mass_dataset() 2022-08-07 19:33:06
intensity_plot(object = object, variable_index = 1)
intensity_plot(object = object, variable_index = 1, color_by = "class")