Export MS2 Data from mass_dataset Object — export_ms2

Exports the MS2 data contained in a mass_dataset object to files. The files can be in MGF or MSP format.

export_ms2_data(object, file_type = c("mgf", "msp"), path = ".")

Arguments

object: A mass_dataset object containing MS2 data to be exported.
file_type: The type of file to export the MS2 data to. Options are "mgf" or "msp". Default is "mgf".
path: The directory where the exported MS2 data files will be saved. Default is the current directory.

No return value. The function writes MS2 data files to disk. Returns NULL and a warning if no MS2 data is present in the object.

if (FALSE) { # \dontrun{
# Assuming 'data' is a mass_dataset object with MS2 data
export_ms2_data(data, file_type = "mgf", path = "output/")
} # }