split_mass_dataset

Split one mass_dataset into several mass_dataset objects.

split_mass_dataset(object, by, fun)

Arguments

object

(required) A mass_dataset class object.

by

column name of sample_info or variable_info

fun

function used to split by. For example, mz, should set it as > 100.

Value

A list of mass_dataset.

Author

Xiaotao Shen shenxt1990@outlook.com

Examples

data("expression_data")
data("sample_info")
data("variable_info")

object =
  create_mass_dataset(
    expression_data = expression_data,
    sample_info = sample_info,
    variable_info = variable_info,
  )

object <-
activate_mass_dataset(object, what = "sample_info")

new_object <-
  split_mass_dataset(object = object, by = "group")

new_object %>% lapply(dim)
#> $Blank
#> variables   samples 
#>      1000         2 
#> 
#> $QC
#> variables   samples 
#>      1000         2 
#> 
#> $Subject
#> variables   samples 
#>      1000         4 
#> 
new_object %>% lapply(colnames)
#> $Blank
#> [1] "Blank_3" "Blank_4"
#> 
#> $QC
#> [1] "QC_1" "QC_2"
#> 
#> $Subject
#> [1] "PS4P1" "PS4P2" "PS4P3" "PS4P4"
#> 

object <-
  activate_mass_dataset(object, what = "variable_info")

new_object <-
  split_mass_dataset(object = object, by = "rt", fun = function(rt) rt > 600)

new_object %>% lapply(dim)
#> [[1]]
#> variables   samples 
#>       245         8 
#> 
#> [[2]]
#> variables   samples 
#>       755         8 
#> 
plot(extract_variable_info(new_object[[1]])$rt)

plot(extract_variable_info(new_object[[2]])$rt)