Generate Parameter Report for mass_dataset Object — report

This function generates an HTML report summarizing the parameters used in the processing of a mass_dataset object. The report is saved in a specified directory.

report_parameters(object, path = ".")

Arguments

object: A mass_dataset object for which the parameter report is to be generated.
path: The directory where the parameter report will be saved. Default is the current working directory.

Value

An HTML report summarizing the parameters used in the processing of the mass_dataset object. The report is saved in the specified directory.

Author

Xiaotao Shen shenxt1990@outlook.com

Examples

if (FALSE) {
data("expression_data")
data("sample_info")
data("variable_info")
object =
  create_mass_dataset(
    expression_data = expression_data,
    sample_info = sample_info,
    variable_info = variable_info
  )
object

library(tidyverse)

object =
object %>%
  activate_mass_dataset(what = "expression_data") %>%
  filter(!is.na(QC_1))

object =
  object %>%
  activate_mass_dataset(what = "expression_data") %>%
  filter(!is.na(QC_2))

object =
object %>%
  mutate_mean_intensity()

object =
  object %>%
  mutate_median_intensity() %>%
  mutate_rsd()

report_parameters(object = object, path = "demo_data")
}